@@ -142,18 +142,34 @@ Request system. To use, simply open the command line, and run the following comm
#### Automatic_TRN_Integrator.py
This module automatically integrates Transcriptional Regulatory Networks in the TRN Universal Graph unit of the database.
Input files must be in JSON format and follow a specific structure, detailed in the script. The "ATRNI_Example" folder contains examples of files, in the correct
format and structure to be implemented in the Automatic TRN Integrator.
#### debugger.py
This module contains useful functions to ensure the database's content integrity.
#### Gene_Expression_Tools.py
This module contains simple generic functions to work with data distributions. In the context of the database development, these tools were used to group
datasets of gene expression data in different degrees of relative gene expression.
#### ncbi_taxonomy.py
Interface to access NCBI Taxonomy and retrieve relevant data
#### timeout.py
Simple decorator module used in several ocasions throughout the database's development. Its purpose is to set a time limit in the execution of a given function.
#### uniprot_fetcher.py
Simple module with functions to access Uniprot's API and to read JSON files.
#### writer.py
This module is integrated in the "launcher.py" script, and creates/updates a database log with a short descriptive summary of the database's contents.
