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Commit 95a1f853 authored by Davide Lagoa's avatar Davide Lagoa
Browse files

new snapshot

parent 307fa04a
......@@ -13,7 +13,7 @@
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-10">
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-11">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
......
eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
org.eclipse.jdt.core.compiler.codegen.targetPlatform=10
org.eclipse.jdt.core.compiler.codegen.targetPlatform=11
org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
org.eclipse.jdt.core.compiler.compliance=10
org.eclipse.jdt.core.compiler.compliance=11
org.eclipse.jdt.core.compiler.debug.lineNumber=generate
org.eclipse.jdt.core.compiler.debug.localVariable=generate
org.eclipse.jdt.core.compiler.debug.sourceFile=generate
......@@ -11,6 +11,6 @@ org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
org.eclipse.jdt.core.compiler.problem.enablePreviewFeatures=disabled
org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
org.eclipse.jdt.core.compiler.problem.reportPreviewFeatures=ignore
org.eclipse.jdt.core.compiler.problem.reportPreviewFeatures=warning
org.eclipse.jdt.core.compiler.release=enabled
org.eclipse.jdt.core.compiler.source=10
org.eclipse.jdt.core.compiler.source=11
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......@@ -5,7 +5,7 @@
<groupId>pt.uminho.ceb.biosystems.transyt</groupId>
<artifactId>scraper</artifactId>
<version>0.0.5-SNAPSHOT</version>
<version>0.0.7-SNAPSHOT</version>
<packaging>jar</packaging>
<name>scraper</name>
......@@ -24,7 +24,7 @@
<artifactId>maven-compiler-plugin</artifactId>
<version>3.7.0</version>
<configuration>
<release>10</release>
<release>11</release>
</configuration>
</plugin>
<plugin>
......@@ -66,7 +66,7 @@
<dependency>
<groupId>pt.uminho.ceb.biosystems.transyt</groupId>
<artifactId>utilities</artifactId>
<version>0.0.5-SNAPSHOT</version>
<version>0.0.7-SNAPSHOT</version>
</dependency>
<dependency>
......
......@@ -23,7 +23,6 @@ import pt.uminho.ceb.biosystems.transyt.utilities.capsules.ReactionContainer;
import pt.uminho.ceb.biosystems.transyt.utilities.capsules.TcNumberContainer;
import pt.uminho.ceb.biosystems.transyt.utilities.connection.LinkConnection;
import pt.uminho.ceb.biosystems.transyt.utilities.connection.TcdbExplorer;
import pt.uminho.ceb.biosystems.transyt.utilities.connection.TcdbRetriever;
import pt.uminho.ceb.biosystems.transyt.utilities.enumerators.Enumerators.TypeOfTransporter;
import pt.uminho.ceb.biosystems.transyt.utilities.files.FilesUtils;
import pt.uminho.ceb.biosystems.transyt.utilities.files.JSONFilesUtils;
......
package pt.uminho.ceb.biosystems.transyt.scraper.tcdb.tcdbTransportTypesRetriever;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
......@@ -34,14 +33,14 @@ public class Retriever {
logger.info("Retrieving TCDB FASTA file...");
// TcdbRetriever.getSubstrates();
TcdbRetriever.getSubstrates();
Set<String> tcNumbers = TcdbExplorer.getTcNumbers(true);
Set<String> tcNumbers = TcdbExplorer.getTcNumbers(false);
Set<String> toSearch = TcdbExplorer.generateTCsFamily(tcNumbers);
FindTransporters.saveAllTCFamiliesInformation(toSearch);
//
Map<String, String> proteinFamilyDescription = TcdbExplorer.getProteinsBelongingToFamilyDescription(tcNumbers);
FilesUtils.saveMapInFile(FilesUtils.getBackupFamilyDescriptionsFilesDirectory().concat("familyDescription.txt"), proteinFamilyDescription);
......@@ -87,8 +86,6 @@ public class Retriever {
//
// System.out.println(transportReactions.get("P26290").get("3.D.3.5.1").getFamily());
///////////////DESCOMENTAR
// n = 99;
// }
......
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