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Commit 60067599 authored by Davide Lagoa's avatar Davide Lagoa
Browse files

new version

parent 4483ba49
modelseed_reactions_22h48m45s2772020.tsv
modelseed_reactions_21h14m23s1482020.tsv
reactions_2h18m38s1862020.json reactions_2h18m38s1862020.json
reactions_20h56m51s1482020.json
tcdb_align_fasta_2h18m32s1862020.faa tcdb_align_fasta_2h18m32s1862020.faa
tcdb_align_fasta_9h48m33s3172020.faa
...@@ -5,7 +5,6 @@ ...@@ -5,7 +5,6 @@
# 1 - E-value threshold to automatically accept result (use the format xE-x where x represents numbers). # 1 - E-value threshold to automatically accept result (use the format xE-x where x represents numbers).
EvalueAccept=0 EvalueAccept=0
#EvalueAccept=1E-50
# 2 - Similarity score blast TCDB # 2 - Similarity score blast TCDB
similarity=0.3 similarity=0.3
...@@ -78,3 +77,6 @@ limit_evalue_accept=1E-50 ...@@ -78,3 +77,6 @@ limit_evalue_accept=1E-50
# 25 - Ignore method 1 # 25 - Ignore method 1
ignore_m1=false ignore_m1=false
# 26 - Force TranSyT to run BLAST and skip cached results
force_blast=true
#Metabolite_Name$Limit (-1 = no limit \ 0 = just himself \ n = generation) #Metabolite_Name$Limit (-1 = no limit \ 0 = just himself \ n = generation)
Drug$0 Drug$2
Antivirals$0 Antivirals$0
Lipid$-1 Lipid$2
Aminoacids$4 Aminoacids$4
\ No newline at end of file Glycerolipid$2
Phospholipid$2
META:Ions$-1
#This document contains the MetaCycID of metabolites that have their ontology relationship missing in MetaCyc
#
Sugar-phosphate =CPD0-1063
\ No newline at end of file
1.A.12
1.A.40
1.A.42
1.A.49
1.A.54.5.4
1.A.57
1.A.61
1.A.85
1.A.89
1.A.90
1.A.96
1.A.97
1.A.98
1.A.104
1.A.108
1.B.76
1.C
1.C.1
1.C.2
1.C.3
1.C.4
1.C.5
1.C.6
1.C.7
1.C.8
1.C.9
1.C.10
1.C.11
1.C.12
1.C.13
1.C.14
1.C.15
1.C.16
1.C.17
1.C.18
1.C.19
1.C.20
1.C.21
1.C.22
1.C.23
1.C.24
1.C.25
1.C.26
1.C.27
1.C.28
1.C.29
1.C.30
1.C.31
1.C.32
1.C.33
1.C.34
1.C.35
1.C.36
1.C.37
1.C.38
1.C.39
1.C.40
1.C.41
1.C.42
1.C.43
1.C.44
1.C.45
1.C.46
1.C.47
1.C.48
1.C.49
1.C.50
1.C.51
1.C.52
1.C.53
1.C.54
1.C.55
1.C.56
1.C.57
1.C.58
1.C.59
1.C.60
1.C.61
1.C.62
1.C.63
1.C.64
1.C.65
1.C.66
1.C.67
1.C.68
1.C.69
1.C.70
1.C.71
1.C.72
1.C.73
1.C.74
1.C.75
1.C.76
1.C.77
1.C.78
1.C.79
1.C.80
1.C.81
1.C.82
1.C.83
1.C.84
1.C.85
1.C.86
1.C.87
1.C.88
1.C.89
1.C.90
1.C.91
1.C.92
1.C.93
1.C.94
1.C.95
1.C.96
1.C.97
1.C.98
1.C.99
1.C.100
1.C.101
1.C.102
1.C.103
1.C.104
1.C.105
1.C.106
1.C.107
1.C.108
1.C.109
1.C.110
1.C.111
1.C.112
1.C.113
1.C.114
1.C.115
1.C.116
1.C.117
1.C.118
1.C.119
1.C.120
1.C.121
1.C.122
1.C.123
1.C.124
1.C.125
1.C.126
1.C.127
1.C.128
1.D
1.D.1
1.D.2
1.D.3
1.D.4
1.D.5
1.D.6
1.D.7
1.D.8
1.D.9
1.D.10
1.D.11
1.D.12
1.D.13
1.D.14
1.D.15
1.D.16
1.D.17
1.D.18
1.D.19
1.D.20
1.D.21
1.D.22
1.D.23
1.D.24
1.D.25
1.D.26
1.D.27
1.D.28
1.D.29
1.D.30
1.D.31
1.D.32
1.D.33
1.D.34
1.D.35
1.D.36
1.D.37
1.D.38
1.D.39
1.D.40
1.D.41
1.D.42
1.D.43
1.D.44
1.D.46
1.D.47
1.D.48
1.D.49
1.D.50
1.D.51
1.D.52
1.D.53
1.D.54
1.D.55
1.D.56
1.D.57
1.D.58
1.D.59
1.D.60
1.D.61
1.D.62
1.D.63
1.D.64
1.D.65
1.D.66
1.D.67
1.D.68
1.D.69
1.D.70
1.D.71
1.D.72
1.D.73
1.D.74
1.D.75
1.D.76
1.D.77
1.D.78
1.D.79
1.D.80
1.D.81
1.D.83
1.D.84
1.D.85
1.D.86
1.D.87
1.D.88
1.D.89
1.D.90
1.D.91
1.D.92
1.D.93
1.D.94
1.D.95
1.D.96
1.D.97
1.D.98
1.D.99
1.D.100
1.D.101
1.D.102
1.D.103
1.D.104
1.D.105
1.D.106
1.D.107
1.D.108
1.D.109
1.D.110
1.D.111
1.D.112
1.D.113
1.D.114
1.D.115
1.D.116
1.D.117
1.D.118
1.D.119
1.D.120
1.E
1.E.1
1.E.2
1.E.3
1.E.4
1.E.5
1.E.6
1.E.7
1.E.8
1.E.9
1.E.10
1.E.11
1.E.12
1.E.13
1.E.14
1.E.15
1.E.16
1.E.17
1.E.18
1.E.19
1.E.20
1.E.21
1.E.22
1.E.23
1.E.24
1.E.25
1.E.26
1.E.27
1.E.28
1.E.29
1.E.30
1.E.31
1.E.32
1.E.33
1.E.34
1.E.35
1.E.36
1.E.37
1.E.38
1.E.39
1.E.40
1.E.41
1.E.42
1.E.43
1.E.44
1.E.45
1.E.46
1.E.47
1.E.48
1.E.49
1.E.50
1.E.51
1.E.52
1.E.53
1.E.54
1.E.55
1.E.56
1.E.57
1.E.58
1.E.59
1.E.60
1.E.61
1.E.62
1.E.63
1.F
1.F.1
1.F.2
1.G
1.G.1
1.G.2
1.G.3
1.G.4
1.G.5
1.G.6
1.G.7
1.G.8
1.G.9
1.G.10
1.G.11
1.G.12
1.G.13
1.G.14
1.G.15
1.G.16
1.G.17
1.G.18
1.G.19
1.G.20
1.G.21
1.G.22
1.H
1.H.1
1.H.2
1.H.3
1.I
1.I.1
1.I.2
1.I.3
1.I.4
1.J
1.J.1
1.K
1.K.1
1.K.2
1.K.3
1.K.4
1.L
1.L.1
1.M
1.M.1
1.M.2
1.M.3
1.M.4
1.M.5
1.M.6
1.N
1.N.1
1.N.2
1.N.3
1.N.4
1.N.5
1.N.6
1.O
1.O.1
1.O.2
1.O.3
1.O.4
1.O.5
1.P
1.P.1
1.Q
1.Q.1
1.R
1.R.1
1.S
1.S.1
1.S.2
1.T
1.U
1.U.1
1.V
1.V.1
1.W
1.W.1
1.W.2
1.W.3
1.W.4
1.W.5
1.W.6
1.W.7
1.W.8
1.W.9
1.W.10
2.A.112
3.A.7
3.A.11
3.A.12
3.A.13
3.A.17
3.A.21
3.A.25
3.A.31
4.F
4.G.1
4.H.1
5.B.1
9.A.15
9.A.37
9.B.14.1
9.B.114
9.B.157
9.B.360
9.B.367
9.B.369
...@@ -7,4 +7,7 @@ Protein ...@@ -7,4 +7,7 @@ Protein
Solute Solute
Substrate Substrate
Nucleobase Nucleobase
Amino acid Amino acid
\ No newline at end of file Antimicrobial
C4-dicarboxylate
Fatty acid
\ No newline at end of file
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