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Commit 3c516604 authored by Emanuel Cunha's avatar Emanuel Cunha
Browse files

reactions integration already being performed with right paths

parent 29e7dffc
......@@ -21,8 +21,8 @@ import pt.uminho.ceb.biosystems.merlin.utilities.io.FileUtils;
public class BiggMain {
// private static String workFolderID = "/workdir/";
private static String workFolderID = "C:\\Users\\Bisbii\\Desktop\\MERLIN\\workdir/"; //Docker (/workdir/)
private static String workFolderID = "/workdir/";
// private static String workFolderID = "C:\\Users\\Bisbii\\Desktop\\MERLIN\\workdir/"; //Docker (/workdir/)
public static void main(String[] args) throws Exception {
......
......@@ -571,7 +571,7 @@ public class ProvideBiggReactionsToGenes {
Container container = new Container(builder);
SBMLLevel3Writer merlinSBML3Writer = new SBMLLevel3Writer("C:\\Users\\Bisbii\\Desktop\\MERLIN\\model.xml",
SBMLLevel3Writer merlinSBML3Writer = new SBMLLevel3Writer(workFolderID + "model.xml",
container, "", false, null, true, SBMLLevelVersion.L3V1, true);
merlinSBML3Writer.writeToFile();
......
......@@ -351,8 +351,8 @@ public class BiggUtils {
public static String getRootDirectory() {
// File file = new File(System.getProperty("workdir")); //docker
File file = new File("C:\\Users\\Bisbii\\Desktop\\MERLIN\\workdir/");
File file = new File(System.getProperty("workdir")); //docker
// File file = new File("C:\\Users\\Bisbii\\Desktop\\MERLIN\\workdir/");
return file.getAbsolutePath().concat("/");
}
......
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