params file new path

35c4f19d · Davide Lagoa · c8bf89c5 · 35c4f19d · 35c4f19d · 35c4f19d
Commit 35c4f19d authored Jan 07, 2020 by Davide Lagoa
5 changed files
--- a/code/runClassification.jar
+++ b/code/runClassification.jar
--- a/code/runClassification__.jar
+++ b/code/runClassification__.jar
--- a/requirements/scraper/backup_files/TCDB_public_fasta/tcdbFasta_11h43m56s4122019.faa
+++ b/requirements/scraper/backup_files/TCDB_public_fasta/tcdbFasta_11h43m56s4122019.faa
--- a/requirements/scraper/backup_files/TCDB_public_fasta/tcdbLastKnownVersion.log
+++ b/requirements/scraper/backup_files/TCDB_public_fasta/tcdbLastKnownVersion.log
@@ -18,3 +18,7 @@ tcdbFasta_15h15m53s2622019.faa
 tcdbFasta_16h40m58s2732019.faa

 tcdbFasta_7h5m36s2832019.faa
+
+tcdbFasta_16h18m23s3122019.faa
+
+tcdbFasta_11h43m56s4122019.faa
--- a/requirements/system/configurations.txt
+++ b/requirements/system/configurations.txt
@@ -31,7 +31,7 @@ coverage=0.8
 bitScore=50

 # 10 - Select the IDs to generate the reactions. Select 'ModelSEED', 'BiGG', 'MetaCyc', or 'KEGG'.
-IDsDatabase=BiGG
+IDsDatabase=KEGG

 # 11 - Allowed difference between compartments (set a value between 0% and 50%).
 difference=30