Commit d228441c authored by Nuno's avatar Nuno
Browse files

waitress_conda_environment

parent 4b7d9a2b
Pipeline #847 canceled with stage
in 13 minutes and 33 seconds
......@@ -27,7 +27,7 @@ dependencies:
- brotlipy=0.7.0
- bz2file=0.98
- c-ares=1.15.0
- ca-certificates=2020.7.22
- ca-certificates=2020.10.14
- cachetools=4.1.1
- certifi=2020.6.20
- cffi=1.14.2
......@@ -91,14 +91,12 @@ dependencies:
- kiwisolver=1.2.0
- lcms2=2.11
- ld_impl_linux-64=2.33.1
- libblas=3.8.0
- libcblas=3.8.0
- lesscpy=0.13.0
- libcrc32c=1.1.1
- libedit=3.1.20191231
- libffi=3.3
- libgcc-ng=9.1.0
- libgfortran-ng=7.3.0
- liblapack=3.8.0
- libpng=1.6.37
- libprotobuf=3.12.4
- libsodium=1.0.18
......@@ -129,8 +127,8 @@ dependencies:
- oauthlib=3.1.0
- olefile=0.46
- openpyxl=3.0.5
- openssl=1.1.1g
- opt_einsum=3.1.0
- openssl=1.1.1h
- opt_einsum=3.3.0
- packaging=20.4
- pandas=1.1.1
- pandoc=2.10.1
......@@ -144,6 +142,7 @@ dependencies:
- pillow=7.2.0
- pip=20.2.2
- pluggy=0.13.1
- ply=3.11
- prometheus_client=0.8.0
- prompt-toolkit=3.0.7
- protobuf=3.12.4
......@@ -186,7 +185,7 @@ dependencies:
- sip=4.19.13
- six=1.15.0
- sqlite=3.33.0
- statsmodels=0.12.0
- statsmodels=0.11.1
- tensorboard=2.2.1
- tensorboard-plugin-wit=1.6.0
- tensorflow=2.2.0
......@@ -206,6 +205,7 @@ dependencies:
- transformers=3.1.0
- typing_extensions=3.7.4.3
- urllib3=1.25.10
- waitress=1.4.4
- wcwidth=0.2.5
- webencodings=0.5.1
- werkzeug=1.0.1
......@@ -222,15 +222,24 @@ dependencies:
- zstd=1.4.5
- pip:
- bioc==1.3.5
- colorama==0.4.3
- future==0.18.2
- gensim==3.8.3
- jsonlines==1.2.0
- keras-tuner==1.0.1
- llvmlite==0.34.0
- lxml==4.4.1
- numba==0.51.2
- opt-einsum==3.3.0
- pdfminer-six==20200726
- pdftitle==0.7
- psutil==5.7.2
- smart-open==2.1.1
- sortedcontainers==2.2.2
- tabulate==0.8.7
- tensorflow-addons==0.11.2
- tensorflow-determinism==0.3.0
- terminaltables==3.1.0
- typeguard==2.9.1
- umap-learn==0.4.6
prefix: /home/malves/miniconda3/envs/biotmpygpu
......@@ -15,6 +15,18 @@ from nltk.stem import WordNetLemmatizer, PorterStemmer
def bioc_to_docs(file, stop_words=None, lower=False, remove_punctuation=False, split_by_hyphen=True, lemmatization=False, stems=False, dl_config=None):
"""
:param file:
:param stop_words:
:param lower:
:param remove_punctuation:
:param split_by_hyphen:
:param lemmatization:
:param stems:
:param dl_config:
:return:
"""
if dl_config:
stop_words = dl_config.stop_words
lower = dl_config.lower
......
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