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# Metabolic Modeling Tutorials

This repository contains a few tutorials on metabolic modeling and strain optimization using MEWpy. 

To run the examples please follow the installation instructions first.

### Installation

To run these tutorials you need a Python 3.6+ environment. If you don't have one already, you can install [miniconda](https://conda.io/miniconda.html). Then you need to install a few other packages.

```
pip install mewpy cplex escher
```

Please note that this will install the free version of [CPLEX](https://www.ibm.com/analytics/cplex-optimizer), which is limited to the simulation of small models. To install the full version you should obtain an academic license.

### Running the examples

Just start jupyter from a terminal and you will be able to run the exercises in your browser.

```
jupyter notebook
```

### Credits and License

Vítor Pereira, CEB-UMINHO, 2021

<a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" /></a>

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This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">Creative Commons Attribution-ShareAlike 4.0 International License</a>.