Commits · master · Vítor Vieira / idg-dream-challenge

08 Apr, 2019 3 commits
- [ADD] smaller files to test deep learning pipeline · f9c473c8
  Delora Baptista authored Apr 08, 2019
  
  f9c473c8
- [ADD] code for deep learning models (drug graph conv + prot Conv1D model) · ba102a71
  Delora Baptista authored Apr 08, 2019
  
  ba102a71
- [ADD] files for round 2 · 1532c936
  Delora Baptista authored Apr 08, 2019
  
  1532c936
15 Nov, 2018 8 commits
- [ADD] Prediction code and first submission · 7c4cbac5
  Vítor Vieira authored Nov 15, 2018
  
  7c4cbac5
- [ADD] SVR model with 500 features · 416b7733
  Vítor Vieira authored Nov 15, 2018
  
  416b7733
- [ADD] Training dataset (subset from test proteins) · 651c0ed5
  Vítor Vieira authored Nov 15, 2018
  
  651c0ed5
- [ADD] Training dataset generation · 5e78813a
  Vítor Vieira authored Nov 15, 2018
  
  5e78813a
- [ADD] Training dataset y and feature types · 8d21c0bf
  Vítor Vieira authored Nov 15, 2018
  
  8d21c0bf
- [ADD] final training dataset · af92f46b
  Vítor Vieira authored Nov 15, 2018
  
  af92f46b
- [ADD] Pre-processing and model training · c66ab7b8
  Vítor Vieira authored Nov 15, 2018
  
  c66ab7b8
- [ADD] Training dataset generation · 141a3556
  Vítor Vieira authored Nov 15, 2018
  
  141a3556
14 Nov, 2018 10 commits
- [ADD] Function for molecular features · eff6afef
  jorgemlferreira authored Nov 14, 2018
```
[ADD] .CSV with protein features for the domains
```
  eff6afef
- [ADD] Alignment features code + data · 32cb77d0
  Vítor Vieira authored Nov 14, 2018
  
  32cb77d0
- Merge remote-tracking branch 'origin/master' · 8cc120e8
  Vítor Vieira authored Nov 14, 2018
  
  8cc120e8
- [UPDATE] Added missing proteins · c0a3fb01
  Vítor Vieira authored Nov 14, 2018
  
  c0a3fb01
- Merge remote-tracking branch 'origin/master' · 6783d9ea
  Delora Baptista authored Nov 14, 2018
  
  6783d9ea
- [ADD] protein descriptors script · e1c90a7c
  Delora Baptista authored Nov 14, 2018
  
  e1c90a7c
- [ADD] Pfam-A v32 clan mapping · 8285567b
  Vítor Vieira authored Nov 14, 2018
  
  8285567b
- [ADD] FASTA sequences for alignment · 8cbac048
  Vítor Vieira authored Nov 14, 2018
  
  8cbac048
- [ADD] Clustal protein sequence alignment · 576dfc0c
  Vítor Vieira authored Nov 14, 2018
  
  576dfc0c
- [ADD] ZINC affinity · 9f1956b1
  Vítor Vieira authored Nov 14, 2018
  
  9f1956b1
13 Nov, 2018 7 commits
- [FIX] Uniprot/PFAM retrieval and parsing · 2e4211b8
  Vítor Vieira authored Nov 13, 2018
  
  2e4211b8
- [FIX] Preprocessing and Uniprot/PFAM retrieval · 00786a8f
  Vítor Vieira authored Nov 13, 2018
  
  00786a8f
- [ADD] machine learning pipeline · c651b918
  Delora Baptista authored Nov 13, 2018
  
  c651b918
- [ADD] official scoring metrics script · 014ac135
  Delora Baptista authored Nov 13, 2018
  
  014ac135
- [ADD] Uniprot/PFAM retrieval and parsing · e0c1948a
  Vítor Vieira authored Nov 13, 2018
  
  e0c1948a
- Merge branch 'master' of https://gitlab.bio.di.uminho.pt/vvieira/idg-dream-challenge · 68d5ee51
  Vítor Vieira authored Nov 13, 2018
  
  68d5ee51
- [WIP] Duplicate columns with >1 target_id · e8d92b83
  Vítor Vieira authored Nov 13, 2018
  
  e8d92b83
08 Nov, 2018 2 commits
- adding embeddings part · 097c04d5
  Delora Baptista authored Nov 08, 2018
  
  097c04d5
- adding test set · b3420dbd
  Delora Baptista authored Nov 08, 2018
  
  b3420dbd
05 Nov, 2018 2 commits
- [INITIAL] Adding data/source files · 386899e4
  Vítor Vieira authored Nov 05, 2018
  
  386899e4
- Add new file · 387989f6
  Vítor Vieira authored Nov 05, 2018
  
  387989f6